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read counting
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reset
1
vote
12
replies
3.9k
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Problem with summarizeOverlaps function
genomicalignments
read counting
8.7 years ago
kgorczak
▴ 10
4
votes
3
replies
2.9k
views
Problem with summarizeOverlaps() when reading >1 BAM file: "stop worker failed"
summarizeoverlaps
rnaseq
bplapply
rangedsummarizedexperiment
read counting
7.9 years ago
ErickF
▴ 40
1
vote
4
replies
2.0k
views
Gviz sashimi read count
Gviz
sashimi
sashimi plots
read counting
bam
updated 7.2 years ago by
Robert Ivanek
▴ 730 • written 7.2 years ago by
bernt.popp
• 0
1
vote
4
replies
2.0k
views
DiffBind error with dba.count after update
diffbind
read counting
warning message
chromatin
atac-seq
updated 6.5 years ago by
Gord Brown
▴ 650 • written 6.5 years ago by
tgjohnst
• 0
0
votes
1
reply
1.1k
views
featureCounts : limits on multioverlap (option -O)
featurecounts
read counting
updated 6.2 years ago by
Gordon Smyth
50k • written 6.2 years ago by
marc.gabriel.01
• 0
3
votes
2
replies
969
views
counting the sequencing reads in 10kb regions on a genome-wide scale
read counting
CNV
rsamtools
updated 6.2 years ago by
James W. MacDonald
65k • written 6.2 years ago by
Bogdan
▴ 670
6 results • Page
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Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Comment: How to use spike-in information (sequences from another species) with DESeq2::DE
by
maria.soler
• 0
Hi, I have a question barely related to this topic. Do you use a custom reference genome combining your organism and the one used as a spik…
Answer: Differential gene expression analysis results
by
ATpoint
★ 4.1k
Pease do not open multiple posts for the same issue: https://support.bioconductor.org/p/9158194/#9158222 The support site is not meant f…
Comment: deseq2 results
by
sajadahmad41454
• 0
thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.
Votes
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
Comment: deseq2 results
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
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